The compositionality and sparsity of high-throughput sequencing data poses a challenge for regression and classification. However, in microbiome research in particular, conditional modeling is an essential tool to investigate relationships between phenotypes and the microbiome. Existing techniques are often inadequate: they either rely on extensions of the linear log-contrast model (which adjusts for compositionality, but is often unable to capture useful signals), or they are based on black-box machine learning methods (which may capture useful signals, but ignore compositionality in downstream analyses). We propose KernelBiome, a kernel-based nonparametric regression and classification framework for compositional data. It is tailored to sparse compositional data and is able to incorporate prior knowledge, such as phylogenetic structure. KernelBiome captures complex signals, including in the zero-structure, while automatically adapting model complexity. We demonstrate on par or improved predictive performance compared with state-of-the-art machine learning methods. Additionally, our framework provides two key advantages: (i) We propose two novel quantities to interpret contributions of individual components and prove that they consistently estimate average perturbation effects of the conditional mean, extending the interpretability of linear log-contrast models to nonparametric models. (ii) We show that the connection between kernels and distances aids interpretability and provides a data-driven embedding that can augment further analysis. Finally, we apply the KernelBiome framework to two public microbiome studies and illustrate the proposed model analysis. KernelBiome is available as an open-source Python package at https://github.com/shimenghuang/KernelBiome.
translated by 谷歌翻译
仪器变量模型使我们能够确定协变量$ x $和响应$ y $之间的因果功能,即使在存在未观察到的混淆的情况下。大多数现有估计器都假定响应$ y $和隐藏混杂因素中的错误项与仪器$ z $不相关。这通常是由图形分离的动机,这一论点也证明了独立性。但是,提出独立限制会导致严格的可识别性结果。我们连接到计量经济学的现有文献,并提供了一种称为HSIC-X的实用方法,用于利用独立性,可以与任何基于梯度的学习程序结合使用。我们看到,即使在可识别的设置中,考虑到更高的矩可能会产生更好的有限样本结果。此外,我们利用独立性进行分布泛化。我们证明,只要这些移位足够强,拟议的估计器对于仪器的分布变化和最佳案例最佳变化是不变的。这些结果即使在未识别的情况下也能够得出这些结果,即仪器不足以识别因果功能。
translated by 谷歌翻译
数据增强是自然语言处理(NLP)模型的鲁棒性评估的重要组成部分,以及增强他们培训的数据的多样性。在本文中,我们呈现NL-Cogmenter,这是一种新的参与式Python的自然语言增强框架,它支持创建两个转换(对数据的修改)和过滤器(根据特定功能的数据拆分)。我们描述了框架和初始的117个变换和23个过滤器,用于各种自然语言任务。我们通过使用其几个转换来分析流行自然语言模型的鲁棒性来证明NL-Upmenter的功效。基础架构,Datacards和稳健性分析结果在NL-Augmenter存储库上公开可用(\ url {https://github.com/gem-benchmark/nl-augmenter})。
translated by 谷歌翻译
上下文的强盗和强化学习算法已成功用于各种交互式学习系统,例如在线广告,推荐系统和动态定价。但是,在高风险应用领域(例如医疗保健)中,它们尚未被广泛采用。原因之一可能是现有方法假定基本机制是静态的,因为它们不会在不同的环境上改变。但是,在许多现实世界中,这些机制可能会跨环境变化,这可能使静态环境假设无效。在本文中,考虑到离线上下文匪徒的框架,我们迈出了解决环境转变问题的一步。我们认为环境转移问题通过因果关系的角度,并提出了多种环境的背景匪徒,从而可以改变基本机制。我们采用因果关系文献的不变性概念,并介绍了政策不变性的概念。我们认为,仅当存在未观察到的变量时,政策不变性才有意义,并表明在这种情况下,保证在适当假设下跨环境概括最佳不变政策。我们的结果建立了因果关系,不变性和上下文土匪之间的具体联系。
translated by 谷歌翻译
Privacy of machine learning models is one of the remaining challenges that hinder the broad adoption of Artificial Intelligent (AI). This paper considers this problem in the context of image datasets containing faces. Anonymization of such datasets is becoming increasingly important due to their central role in the training of autonomous cars, for example, and the vast amount of data generated by surveillance systems. While most prior work de-identifies facial images by modifying identity features in pixel space, we instead project the image onto the latent space of a Generative Adversarial Network (GAN) model, find the features that provide the biggest identity disentanglement, and then manipulate these features in latent space, pixel space, or both. The main contribution of the paper is the design of a feature-preserving anonymization framework, StyleID, which protects the individuals' identity, while preserving as many characteristics of the original faces in the image dataset as possible. As part of the contribution, we present a novel disentanglement metric, three complementing disentanglement methods, and new insights into identity disentanglement. StyleID provides tunable privacy, has low computational complexity, and is shown to outperform current state-of-the-art solutions.
translated by 谷歌翻译
Data-centric artificial intelligence (data-centric AI) represents an emerging paradigm emphasizing that the systematic design and engineering of data is essential for building effective and efficient AI-based systems. The objective of this article is to introduce practitioners and researchers from the field of Information Systems (IS) to data-centric AI. We define relevant terms, provide key characteristics to contrast the data-centric paradigm to the model-centric one, and introduce a framework for data-centric AI. We distinguish data-centric AI from related concepts and discuss its longer-term implications for the IS community.
translated by 谷歌翻译
The mechanism of existing style transfer algorithms is by minimizing a hybrid loss function to push the generated image toward high similarities in both content and style. However, this type of approach cannot guarantee visual fidelity, i.e., the generated artworks should be indistinguishable from real ones. In this paper, we devise a new style transfer framework called QuantArt for high visual-fidelity stylization. QuantArt pushes the latent representation of the generated artwork toward the centroids of the real artwork distribution with vector quantization. By fusing the quantized and continuous latent representations, QuantArt allows flexible control over the generated artworks in terms of content preservation, style similarity, and visual fidelity. Experiments on various style transfer settings show that our QuantArt framework achieves significantly higher visual fidelity compared with the existing style transfer methods.
translated by 谷歌翻译
This report summarizes the 3rd International Verification of Neural Networks Competition (VNN-COMP 2022), held as a part of the 5th Workshop on Formal Methods for ML-Enabled Autonomous Systems (FoMLAS), which was collocated with the 34th International Conference on Computer-Aided Verification (CAV). VNN-COMP is held annually to facilitate the fair and objective comparison of state-of-the-art neural network verification tools, encourage the standardization of tool interfaces, and bring together the neural network verification community. To this end, standardized formats for networks (ONNX) and specification (VNN-LIB) were defined, tools were evaluated on equal-cost hardware (using an automatic evaluation pipeline based on AWS instances), and tool parameters were chosen by the participants before the final test sets were made public. In the 2022 iteration, 11 teams participated on a diverse set of 12 scored benchmarks. This report summarizes the rules, benchmarks, participating tools, results, and lessons learned from this iteration of this competition.
translated by 谷歌翻译
The BLOOM model is a large open-source multilingual language model capable of zero-shot learning, but its pretraining was limited to 46 languages. To improve its zero-shot performance on unseen languages, it is desirable to adapt BLOOM, but previous works have only explored adapting small language models. In this work, we apply existing language adaptation strategies to BLOOM and benchmark its zero-shot prompting performance on eight new languages. We find language adaptation to be effective at improving zero-shot performance in new languages. Surprisingly, adapter-based finetuning is more effective than continued pretraining for large models. In addition, we discover that prompting performance is not significantly affected by language specifics, such as the writing system. It is primarily determined by the size of the language adaptation data. We also add new languages to BLOOMZ, which is a multitask finetuned version of BLOOM capable of following task instructions zero-shot. We find including a new language in the multitask fine-tuning mixture to be the most effective method to teach BLOOMZ a new language. We conclude that with sufficient training data language adaptation can generalize well to diverse languages. Our code is available at \url{https://github.com/bigscience-workshop/multilingual-modeling/}.
translated by 谷歌翻译
The number of international benchmarking competitions is steadily increasing in various fields of machine learning (ML) research and practice. So far, however, little is known about the common practice as well as bottlenecks faced by the community in tackling the research questions posed. To shed light on the status quo of algorithm development in the specific field of biomedical imaging analysis, we designed an international survey that was issued to all participants of challenges conducted in conjunction with the IEEE ISBI 2021 and MICCAI 2021 conferences (80 competitions in total). The survey covered participants' expertise and working environments, their chosen strategies, as well as algorithm characteristics. A median of 72% challenge participants took part in the survey. According to our results, knowledge exchange was the primary incentive (70%) for participation, while the reception of prize money played only a minor role (16%). While a median of 80 working hours was spent on method development, a large portion of participants stated that they did not have enough time for method development (32%). 25% perceived the infrastructure to be a bottleneck. Overall, 94% of all solutions were deep learning-based. Of these, 84% were based on standard architectures. 43% of the respondents reported that the data samples (e.g., images) were too large to be processed at once. This was most commonly addressed by patch-based training (69%), downsampling (37%), and solving 3D analysis tasks as a series of 2D tasks. K-fold cross-validation on the training set was performed by only 37% of the participants and only 50% of the participants performed ensembling based on multiple identical models (61%) or heterogeneous models (39%). 48% of the respondents applied postprocessing steps.
translated by 谷歌翻译